Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs34095888 chr7:32771353 G/A 0.000105 495 31.45 32.9 31.97 KM Plot
THCA rs34139543 chr16:72158477 C/T 2.46E-5 498 31.8 27.43 17.77 KM Plot
THCA rs34198915 chr2:87021745 C/T 6.85E-8 499 32.6 28.43 32.1 KM Plot
THCA rs34198967 chr1:152869541 T/C 9.43E-5 501 31.47 32.9 58.43 KM Plot
THCA rs34256565 chr2:87025759 T/C 6.09E-8 503 32.82 28.12 32.1 KM Plot
THCA rs34269788 chr3:53936811 C/T 2.8E-6 502 31.47 32.97 24.75 KM Plot
THCA rs34270657 chr16:72042635 A/G 1.34E-6 494 31.8 26.28 27.97 KM Plot
THCA rs34290283 chr10:104682085 A/AT 3.33E-9 501 31.03 33.53 29.58 KM Plot
THCA rs34333207 chr2:28993330 G/GA 0.000133 502 31.47 31.93 38.87 KM Plot
THCA rs34334052 chr6:133231829 C/T 8.06E-7 498 31.42 32.67 24.42 KM Plot
THCA rs34341339 chr7:32771488 G/A 0.000103 495 31.43 32.9 31.97 KM Plot
THCA rs34353387 chr2:86974834 A/C 2.84E-9 501 32.43 27.7 14.73 KM Plot
THCA rs34546581 chr2:87021659 G/A 6.85E-8 499 32.6 28.43 32.1 KM Plot
THCA rs34552886 chr6:130381074 G/A 2.83E-7 498 31.3 33.53 32.5 KM Plot
THCA rs34561605 chr12:104592313 AAG/A 2.33E-5 498 31.83 28.85 16.8 KM Plot